Package: MESS 0.6.0

Claus Thorn Ekstrøm

MESS: Miscellaneous Esoteric Statistical Scripts

A mixed collection of useful and semi-useful diverse statistical functions, some of which may even be referenced in The R Primer book. See Ekstrøm, C. T. (2016). The R Primer. 2nd edition. Chapman & Hall.

Authors:Claus Thorn Ekstrøm [aut, cre], Niels Aske Lundtorp Olsen [ctb]

MESS_0.6.0.tar.gz
MESS_0.6.0.zip(r-4.7)MESS_0.6.0.zip(r-4.6)MESS_0.6.0.zip(r-4.5)
MESS_0.6.0.tgz(r-4.6-x86_64)MESS_0.6.0.tgz(r-4.6-arm64)MESS_0.6.0.tgz(r-4.5-x86_64)MESS_0.6.0.tgz(r-4.5-arm64)
MESS_0.6.0.tar.gz(r-4.7-arm64)MESS_0.6.0.tar.gz(r-4.7-x86_64)MESS_0.6.0.tar.gz(r-4.6-arm64)MESS_0.6.0.tar.gz(r-4.6-x86_64)
MESS_0.6.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
MESS/json (API)

# Install 'MESS' in R:

install.packages('MESS', repos = c('https://ekstroem.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ekstroem/mess/issues

Uses libs:

openblas– Optimized BLAS
c++– GNU Standard C++ Library v3

Datasets:

bdstat - Danish live births and deaths
bees - Bee data. Number of different types of bees caught.
clotting - Blood clotting for 158 rats
earthquakes - Earthquakes in 2015
greenland - Average yearly summer air temperature for Tasiilaq, Greenland
happiness - Happiness score and tax rates for 148 countries
icecreamads - Ice cream consumption and advertising
kwdata - Non-parametric Kruskal Wallis data example
lifeexpect - Estimated life expectancy for Danish newborns
matched - Flu hospitalization
nh4 - Ammonia nitrogen found in river
picea - Ozone concentration damage to picea spruce
qpcr - Gene expression from real-time quantitative PCR
rainman - Perception of points in a swarm
smokehealth - Effect of smoking on self reported health
soccer - Danish national soccer players
superroot2 - Gene expression data from two-color dye-swap experiment

On CRAN:

biostatistics power-analysis statistical-analysis statistical-methods statistical-models openblas cpp

9.00 score 4 stars 12 packages 500 scripts 14k downloads 57 mentions 65 exports 93 dependencies

Last updated from:9936585f73. Checks:11 WARNING, 2 OK. Indexed: yes.

Target	Result	Time
linux-devel-arm64	WARNING	254
linux-devel-x86_64	WARNING	267
source / vignettes	OK	296
linux-release-arm64	WARNING	267
linux-release-x86_64	WARNING	260
macos-release-arm64	WARNING	223
macos-release-x86_64	WARNING	354
macos-oldrel-arm64	WARNING	191
macos-oldrel-x86_64	WARNING	435
windows-devel	WARNING	261
windows-release	WARNING	331
windows-oldrel	WARNING	264
wasm-release	OK	215

Exports:adaptive.weights add_torows age auc bin categorize clipit cmd col.alpha col.shade col.tint colCumSum common.shared conditional_rowMeans cumsumbinning dCor dCov expand_table extended.shared fac2num feature.test filldown founder.shared geekin gkgamma ht hwe_frequencies ks_cumtest loadRData lower.tri.vector maximum_subarray mfastLmCpp monte_carlo_chisq_test ordered.clusters pairwise_combination_indices pairwise_distance_correlation pairwise_Schur_product pairwise.cor.test panel.hist panel.r2 plr power_binom_test power_mcnemar_test power_prop_test power_t_test prepost.test qdiag QIC quadform repmat residual_plot residualplot rmvt.pedigree rmvtnorm.pedigree rnorm_perfect rootonorm round_percent rud screen_variables segregate.genes sinv tracemp usd wallyplot write.xml

Dependencies:backports base64enc bit bit64 broom bslib cachem cli clipr codetools cpp11 crayon digest dplyr evaluate farver fastmap fontawesome fontBitstreamVera fontLiberation fontquiver forcats foreach fs gdtools geeM geepack generics ggformula ggiraph ggplot2 ggridges glmnet glue gtable haven highr hms htmltools htmlwidgets isoband iterators jquerylib jsonlite kinship2 knitr labeling labelled lattice lifecycle magrittr MASS Matrix memoise mime mosaicCore mvtnorm pillar pkgconfig prettyunits progress purrr quadprog R6 rappdirs RColorBrewer Rcpp RcppArmadillo RcppEigen RcppParallel readr rlang rmarkdown S7 sass scales shape stringi stringr survival systemfonts tibble tidyr tidyselect tinytex tzdb utf8 vctrs viridisLite vroom withr xfun yaml

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Compute weights for use with adaptive lasso.	adaptive.weights
Fast addition of vector to each row of matrix	add_torows
Compute the age of a person from two dates.	age
Compute the area under the curve for two vectors.	auc
Danish live births and deaths	bdstat
Bee data. Number of different types of bees caught.	bees
Fast binning of numeric vector into equidistant bins	bin
A table function to use with magrittr pipes	categorize
Copy an object as R-code to the clipboard	clipit
Blood clotting for 158 rats	clotting
Correlation matrix distance	cmd
Add and set alpha channel for RGB color	col.alpha
Shade an RGB color	col.shade
Tint an RGB color	col.tint
Apply cumsum to each column of matrix	colCumSum
Compute a common shared environment matrix	common.shared common.shared.pedigree common.shared.pedigreeList
Form row means conditional on number of non-missing	conditional_rowMeans
Binning based on cumulative sum with reset above threshold	cumsumbinning
Fast distance correlation matrix	dCor
Fast distance covariance matrix	dCov
Drop All Possible Single Terms to a geeglm Model Using Wald or Score Test	drop1.geeglm
Drop All Possible Single Terms to a geem Model Using Wald or Score Test	drop1.geem
Earthquakes in 2015	earthquakes
Expand table or matrix to data frame	expand_table
Compute a common shared environment matrix	extended.shared extended.shared.pedigree extended.shared.pedigreeList
Convert factor to numeric vector	fac2num
Inference for features identified by the Lasso	feature.test
Fill down NA with the last observed observation	filldown
Compute a common shared environment matrix	founder.shared founder.shared.pedigree founder.shared.pedigreeList
Fit a generalized estimating equation (GEE) model with fixed additive correlation structure	geekin print.geekin
Goodman-Kruskal's gamma statistic for a two-dimensional table	gkgamma
Average yearly summer air temperature for Tasiilaq, Greenland	greenland
Happiness score and tax rates for 148 countries	happiness
Show the head and tail of an object	ht
Fast estimation of allele and genotype frequencies under Hardy-Weinberg equilibrium	hwe_frequencies
Ice cream consumption and advertising	icecreamads
Kolmogorov-Smirnov goodness of fit test for cumulative discrete data	ks_cumtest
Non-parametric Kruskal Wallis data example	kwdata
Estimated life expectancy for Danish newborns	lifeexpect
Load and extract object from RData file	loadRData
Split Matrix by Clusters and Return Lower Triangular Parts as Vector	lower.tri.vector
Flu hospitalization	matched
Fast computation of maximum sum subarray	maximum_subarray
Fast marginal simple regresion analyses	mfastLmCpp
Two-sided table test with fixed margins	monte_carlo_chisq_test
Ammonia nitrogen found in river	nh4
Check if unique elements of a vector appear in contiguous clusters	ordered.clusters
Compute all pairwise combinations of indices	pairwise_combination_indices
Compute Schur products (element-wise) of all pairwise combinations of columns in matrix	pairwise_Schur_product
Pairwise Tests for Association/Correlation Between Paired Samples	pairwise.cor.test
Panel plot of histogram and density curve	panel.hist
Panel plot of R2 values for pairs	panel.r2
Ozone concentration damage to picea spruce	picea
Fast computation of several simple linear regressions	plr plr.matrix plr.numeric
Power Calculations for Exact Test of a simple null hypothesis in a Bernoulli experiment	power_binom_test
Power Calculations for Exact and Asymptotic McNemar Test in a 2 by 2 table	power_mcnemar_test
Power Calculations for Two-Sample Test for Proportions with unequal sample size	power_prop_test
Power calculations for one and two sample t tests with unequal sample size	power_t_test
Pretest-posttest RCT for quantitative observations with possible missing values	prepost.test
Fast extraction of matrix diagonal	qdiag
Quasi Information Criterion	QIC QIC.geeglm QIC.geekin QIC.ordgee
Gene expression from real-time quantitative PCR	qpcr
Fast quadratic form computation	quadform
Perception of points in a swarm	rainman
Fast replication of a matrix	repmat
Plots a standardized residual	residual_plot residual_plot.default residual_plot.glm residual_plot.lm
Plots a standardized residual	residualplot residualplot.default residualplot.glm residualplot.lm
Simulate residual multivariate t-distributed data from a polygenic model	rmvt.pedigree
Simulate residual multivariate Gaussian data from a polygenic model	rmvtnorm.pedigree
Simulate values from a perfect normal distribution	rnorm_perfect
Hanging rootogram for normal distribution	rootogram rootonorm
Round vector of number to percentages	round_percent
Simulate randomized urn design	rud
Internal functions for the MESS package	scorefct
Screen variable before penalized regression	screen_variables
Segregate genes through a pedigree	segregate.genes
Invert a symmetric positive-definite matrix	sinv
Effect of smoking on self reported health	smokehealth
Danish national soccer players	soccer
Gene expression data from two-color dye-swap experiment	superroot2
Fast computation of trace of matrix product	tracemp
Unbiased standard deviation	usd
Plots a Wally plot	wallyplot wallyplot.default wallyplot.lm
Write a data frame in XML format	write.xml