{ "_id": "6ad4a2c6dc7ca4d810c6d85a", "Package": "MethComp", "Version": "1.30.2", "Date": "2024-10-15", "Title": "Analysis of Agreement in Method Comparison Studies", "Authors@R": "c(person(given=\"Bendix\", family=\"Carstensen\", email=\"b@bxc.dk\", role=c(\"aut\")),\nperson(given=\"Lyle\", family=\"Gurrin\", email=\"lgurrin@unimelb.edu.au\", role=c(\"aut\")),\nperson(given=\"Claus Thorn\", family=\"Ekstrøm\", email=\"ekstrom@sund.ku.dk\", role=c(\"aut\", \"cre\")),\nperson(given=\"Michal\", family=\"Figurski\", email=\"figurski@mail.med.upenn.edu\", role=c(\"aut\")))", "Description": "Methods (standard and advanced) for analysis of agreement\nbetween measurement methods. These cover Bland-Altman plots,\nDeming regression, Lin's Total deviation index, and\ndifference-on-average regression. See Carstensen B. (2010)\n\"Comparing Clinical Measurement Methods: A Practical Guide\n(Statistics in Practice)\" for more\ninformation.", "License": "GPL (>= 2)", "Encoding": "UTF-8", "URL": "http://BendixCarstensen.com/MethComp/", "BugReports": "https://github.com/ekstroem/MethComp/issues", "SystemRequirements": "JAGS (http://mcmc-jags.sourceforge.net)", "NeedsCompilation": "no", "ByteCompile": "true", "RoxygenNote": "7.3.1", "Config/pak/sysreqs": "jags", "Repository": "https://ekstroem.r-universe.dev", "Date/Publication": "2024-10-20 08:51:38 UTC", "RemoteUrl": "https://github.com/ekstroem/methcomp", "RemoteRef": "HEAD", "RemoteSha": "d1e2ae2ac80da3ce41086bede8e480f0b95d706b", "Packaged": { "Date": "2026-10-18 10:34:48 UTC", "User": "root" }, "Author": "Bendix Carstensen [aut],\nLyle Gurrin [aut],\nClaus Thorn Ekstrøm [aut, cre],\nMichal Figurski [aut]", "Maintainer": "Claus Thorn Ekstrøm ", "_user": "ekstroem", "_type": "src", "_file": "MethComp_1.30.2.tar.gz", "_fileid": "https://r2.ropensci.org/2d149d80293e107aa707ec58c5d5c10f6795fe27ef0bde30c24caf97c44b28bc", "_filesize": 3139305, "_sha256": "2d149d80293e107aa707ec58c5d5c10f6795fe27ef0bde30c24caf97c44b28bc", "_expires": "2027-01-26T10:43:16.000Z", "_created": "2026-10-18T10:34:48.000Z", "_published": "2026-10-18T10:43:18.568Z", "_buildurl": "https://github.com/r-universe/ekstroem/actions/runs/39119622320", "_status": "success", "_host": "GitHub-Actions", "_jobs": [ { "job": 117653001941, "time": 173, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "12133574039" }, { "job": 117653002009, "time": 164, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "12134036647" }, { "job": 117653001773, "time": 110, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "12133244084" }, { "job": 117653001777, "time": 121, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "12133248712" }, { "job": 117652441742, "time": 171, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "12133578552" }, { "job": 117653001782, "time": 98, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "12132799954" }, { "job": 117653001927, "time": 110, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "12133986771" }, { "job": 117653001962, "time": 97, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "12134111297" }, { "job": 117653002090, "time": 67, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "12133333107" } ], "_upstream": "https://github.com/ekstroem/methcomp", "_commit": { "id": "d1e2ae2ac80da3ce41086bede8e480f0b95d706b", "author": "ekstroem ", "committer": "ekstroem ", "message": "Version 1.30.2 for CRAN with updates to documentation\n", "time": 1729414298 }, "_maintainer": { "name": "Claus Thorn Ekstrøm", "email": "ekstrom@sund.ku.dk", "login": "ekstroem", "description": "Statistician, scientist, researcher, R tinkerer", "uuid": 6160801 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5", "role": "Depends" }, { "package": "coda", "role": "Imports" }, { "package": "nlme", "role": "Imports" }, { "package": "lattice", "role": "Suggests" }, { "package": "lme4", "role": "Suggests" }, { "package": "rjags", "role": "Suggests" } ], "_owner": "ekstroem", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 1, "_contributors": [ { "user": "ekstroem", "count": 32, "uuid": 6160801 }, { "user": "johsenevoldsen", "count": 1, "uuid": 11048760 } ], "_userbio": { "uuid": 6160801, "type": "user", "name": "Claus Ekstrøm", "followers": 105, "description": "Statistician, scientist, researcher, R tinkerer" }, "_downloads": { "count": 465, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/MethComp" }, "_mentions": 23, "_devurl": "https://github.com/ekstroem/methcomp", "_searchresults": 115, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/MethComp.html", "extra/readme.html", "extra/readme.md" ], "_homeurl": "https://github.com/ekstroem/methcomp", "_realowner": "ekstroem", "_cranurl": true, "_releases": [ { "version": "1.3", "date": "2011-02-18" }, { "version": "1.15", "date": "2012-03-29" }, { "version": "1.22", "date": "2013-06-18" }, { "version": "1.22.1", "date": "2015-03-08" }, { "version": "1.22.2", "date": "2015-03-31" }, { "version": "1.30.0", "date": "2020-01-19" }, { "version": "1.30.2", "date": "2024-10-20" } ], "_exports": [ "abconv", "AltReg", "BA.est", "BA.plot", "bothlines", "check.trans", "choose.trans", "corr.measures", "DA.reg", "DA2y", "Deming", "ends", "has.repl", "make.repl", "MCmcmc", "Meth", "Meth.sim", "MethComp", "middle", "PBreg", "perm.repl", "sample.Meth", "TDI", "to.long", "to.wide", "trace.MCmcmc", "y2DA" ], "_datasets": [ { "name": "Ancona", "title": "Data from a rating experiment of recorgnizing point counts.", "object": "Ancona", "file": "Ancona.rda", "class": [ "data.frame" ], "fields": [ "rater", "item", "repl", "score" ], "rows": 510, "table": true, "tojson": true }, { "name": "cardiac", "title": "Measurement of cardiac output by two different methods.", "object": "cardiac", "file": "cardiac.rda", "class": [ "data.frame" ], "fields": [ "meth", "item", "repl", "y" ], "rows": 120, "table": true, "tojson": true }, { "name": "CardOutput", "title": "Measurements of Cardiac output.", "object": "CardOutput", "file": "CardOutput.rda", "class": [ "data.frame" ], "fields": [ "Age", "Diag", "VO2", "Svo2", "Scvo2", "TCO", "FCO", "Sex" ], "rows": 15, "table": true, "tojson": true }, { "name": "Enzyme", "title": "Enzyme activity data", "object": "Enzyme", "file": "Enzyme.rda", "class": [ "data.frame" ], "fields": [ "meth", "item", "y" ], "rows": 72, "table": true, "tojson": true }, { "name": "fat", "title": "Measurements of subcutaneous and visceral fat", "object": "fat", "file": "fat.rda", "class": [ "data.frame" ], "fields": [ "Id", "Obs", "Rep", "Sub", "Vic" ], "rows": 258, "table": true, "tojson": true }, { "name": "glucose", "title": "Glucose measurements by different methods", "object": "glucose", "file": "glucose.rda", "class": [ "data.frame" ], "fields": [ "meth", "type", "item", "time", "cent", "y" ], "rows": 1302, "table": true, "tojson": true }, { "name": "hba.MC", "title": "A MCmcmc object from the hba1c data", "object": "hba.MC", "file": "hba.MC.rda", "class": [ "MethComp", "mcmc.list" ], "fields": [], "table": true, "tojson": false }, { "name": "hba1c", "title": "Measurements of HbA1c from Steno Diabetes Center", "object": "hba1c", "file": "hba1c.rda", "class": [ "data.frame" ], "fields": [ "dev", "type", "item", "d.samp", "d.ana", "y" ], "rows": 835, "table": true, "tojson": true }, { "name": "milk", "title": "Measurement of fat content of human milk by two different methods.", "object": "milk", "file": "milk.rda", "class": [ "data.frame" ], "fields": [ "meth", "item", "y" ], "rows": 90, "table": true, "tojson": true }, { "name": "ox", "title": "Measurement of oxygen saturation in blood", "object": "ox", "file": "ox.rda", "class": [ "data.frame" ], "fields": [ "meth", "item", "repl", "y" ], "rows": 354, "table": true, "tojson": true }, { "name": "ox.MC", "title": "A MCmcmc object from the oximetry data.", "object": "ox.MC", "file": "ox.MC.rda", "class": [ "MCmcmc", "mcmc.list" ], "fields": [], "table": true, "tojson": false }, { "name": "PEFR", "title": "Peak Expiratory Flow Rate (PEFR) measurements with Wright peak flow and mini Wright peak flow meter.", "object": "PEFR", "file": "PEFR.rda", "class": [ "data.frame" ], "fields": [ "meth", "item", "repl", "y" ], "rows": 68, "table": true, "tojson": true }, { "name": "plvol", "title": "Measurements of plasma volume measured by two different methods.", "object": "plvol", "file": "plvol.rda", "class": [ "data.frame" ], "fields": [ "meth", "item", "y" ], "rows": 198, "table": true, "tojson": true }, { "name": "rainman", "title": "Perception of points in a swarm", "object": "rainman", "file": "rainman.rda", "class": [ "data.frame" ], "fields": [ "SAND", "ME", "TM", "AJ", "BM", "LO" ], "rows": 30, "table": true, "tojson": true }, { "name": "sbp", "title": "Systolic blood pressure measured by three different methods.", "object": "sbp", "file": "sbp.rda", "class": [ "data.frame" ], "fields": [ "meth", "item", "repl", "y" ], "rows": 765, "table": true, "tojson": true }, { "name": "sbp.MC", "title": "A MCmcmc object from the sbp data", "object": "sbp.MC", "file": "sbp.MC.rda", "class": [ "MCmcmc", "mcmc.list" ], "fields": [], "table": true, "tojson": false }, { "name": "scint", "title": "Relative renal function by Scintigraphy", "object": "scint", "file": "scint.rda", "class": [ "data.frame" ], "fields": [ "meth", "item", "y", "age", "sex" ], "rows": 222, "table": true, "tojson": true }, { "name": "VitCap", "title": "Merits of two instruments designed to measure certain aspects of human lung function (Vital Capacity)", "object": "VitCap", "file": "VitCap.rda", "class": [ "data.frame" ], "fields": [ "meth", "item", "y", "user", "instrument" ], "rows": 288, "table": true, "tojson": true } ], "_help": [ { "page": "abconv", "title": "Derive linear conversion coefficients from a set of indeterminate coefficients", "topics": [ "abconv" ] }, { "page": "AltReg", "title": "Estimate in a method comparison model with replicates", "topics": [ "AltReg" ] }, { "page": "Ancona", "title": "Data from a rating experiment of recorgnizing point counts.", "topics": [ "Ancona" ] }, { "page": "BA.est", "title": "Bias and variance components for a Bland-Altman plot.", "topics": [ "BA.est" ] }, { "page": "plot", "title": "Bland-Altman plot of differences versus averages.", "topics": [ "BA.plot", "plot.Meth", "plot.PBreg", "plot.VarComp" ] }, { "page": "bothlines", "title": "Add regression lines to a plot", "topics": [ "bothlines" ] }, { "page": "cardiac", "title": "Measurement of cardiac output by two different methods.", "topics": [ "cardiac" ] }, { "page": "CardOutput", "title": "Measurements of Cardiac output.", "topics": [ "CardOutput" ] }, { "page": "check.trans", "title": "Functions to handle transformations of measurement results.", "topics": [ "check.trans" ] }, { "page": "choose.trans", "title": "Functions to handle transformations of measurement results.", "topics": [ "choose.trans" ] }, { "page": "corr.measures", "title": "Classical association measures", "topics": [ "corr.measures" ] }, { "page": "DA.reg", "title": "Make a regression of differences on averages", "topics": [ "DA.reg" ] }, { "page": "DA2y", "title": "Convert DA to (classical) regression", "topics": [ "DA2y" ] }, { "page": "Deming", "title": "Regression with errors in both variables (Deming regression)", "topics": [ "Deming" ] }, { "page": "ends", "title": "Function to identify the extremes of a vector", "topics": [ "ends" ] }, { "page": "Enzyme", "title": "Enzyme activity data", "topics": [ "Enzyme" ] }, { "page": "fat", "title": "Measurements of subcutaneous and visceral fat", "topics": [ "fat" ] }, { "page": "glucose", "title": "Glucose measurements by different methods", "topics": [ "glucose" ] }, { "page": "hba.MC", "title": "A MCmcmc object from the hba1c data", "topics": [ "hba.MC" ] }, { "page": "hba1c", "title": "Measurements of HbA1c from Steno Diabetes Center", "topics": [ "hba1c" ] }, { "page": "MCmcmc", "title": "Fit a model for method comparison studies using WinBUGS", "topics": [ "MCmcmc" ] }, { "page": "Meth", "title": "Create a Meth object representing a method comparison study", "topics": [ "Meth" ] }, { "page": "Meth.sim", "title": "Simulate a dataframe containing replicate measurements on the same items using different methods.", "topics": [ "Meth.sim" ] }, { "page": "MethComp", "title": "Summarize conversion equations and prediction intervals between methods.", "topics": [ "MethComp" ] }, { "page": "middle", "title": "Function to identify the middle of a vector", "topics": [ "middle" ] }, { "page": "milk", "title": "Measurement of fat content of human milk by two different methods.", "topics": [ "milk" ] }, { "page": "ox", "title": "Measurement of oxygen saturation in blood", "topics": [ "ox" ] }, { "page": "ox.MC", "title": "A MCmcmc object from the oximetry data.", "topics": [ "ox.MC" ] }, { "page": "pairs", "title": "Create a pairs plot for an MCmcmc object", "topics": [ "pairs.MCmcmc" ] }, { "page": "PBreg", "title": "Passing-Bablok regression", "topics": [ "PBreg", "print.PBreg" ] }, { "page": "PEFR", "title": "Peak Expiratory Flow Rate (PEFR) measurements with Wright peak flow and mini Wright peak flow meter.", "topics": [ "PEFR" ] }, { "page": "perm.repl", "title": "Manipulate the replicate numbering within (item,method)", "topics": [ "has.repl", "make.repl", "perm.repl" ] }, { "page": "plot.MCmcmc", "title": "Plot estimated conversion lines and formulae.", "topics": [ "plot.MCmcmc" ] }, { "page": "plot.MethComp", "title": "Summarize conversion equations and prediction intervals between methods.", "topics": [ "plot.MethComp" ] }, { "page": "plvol", "title": "Measurements of plasma volume measured by two different methods.", "topics": [ "plvol" ] }, { "page": "predict", "title": "Predict results from PBreg object", "topics": [ "predict.PBreg" ] }, { "page": "print", "title": "Print a MCmcmc object", "topics": [ "print.MCmcmc" ] }, { "page": "rainman", "title": "Perception of points in a swarm", "topics": [ "rainman" ] }, { "page": "sample.Meth", "title": "Sample Meth object with replacement", "topics": [ "sample.Meth" ] }, { "page": "sbp", "title": "Systolic blood pressure measured by three different methods.", "topics": [ "sbp" ] }, { "page": "sbp.MC", "title": "A MCmcmc object from the sbp data", "topics": [ "sbp.MC" ] }, { "page": "scint", "title": "Relative renal function by Scintigraphy", "topics": [ "scint" ] }, { "page": "subset", "title": "Subset an MCmcmc object", "topics": [ "subset.MCmcmc" ] }, { "page": "summary", "title": "Summary", "topics": [ "summary.MCmcmc" ] }, { "page": "summary.Meth", "title": "Summary for Meth obect", "topics": [ "summary.Meth" ] }, { "page": "TDI", "title": "Compute Lin's Total deviation index", "topics": [ "TDI" ] }, { "page": "to.long", "title": "Functions to convert between long and wide representations of data", "topics": [ "to.long" ] }, { "page": "to.wide", "title": "Functions to convert between long and wide representations of data", "topics": [ "to.wide" ] }, { "page": "trace.MCmcmc", "title": "Functions to graphically assess the convergence of the MCMC-simulation in a MCmcmc object", "topics": [ "check.MCmcmc", "post.MCmcmc", "trace.MCmcmc" ] }, { "page": "VitCap", "title": "Merits of two instruments designed to measure certain aspects of human lung function (Vital Capacity)", "topics": [ "VitCap" ] }, { "page": "y2DA", "title": "Convert DA to (classical) regression", "topics": [ "y2DA" ] } ], "_readme": "https://github.com/ekstroem/methcomp/raw/HEAD/README.md", "_rundeps": [ "coda", "lattice", "nlme" ], "_score": 4.7596678446896306, "_indexed": true, "_nocasepkg": "methcomp", "_universes": [ "ekstroem" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.30.2", "date": "2026-10-18T10:37:16.000Z", "distro": "resolute", "commit": "d1e2ae2ac80da3ce41086bede8e480f0b95d706b", "fileid": "https://r2.ropensci.org/922dbecad12f7b094140b02291b12a926df3f2f2627395c72e0c2c2118237b05", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ekstroem/actions/runs/39119622320" }, { "r": "4.6.1", "os": "linux", "version": "1.30.2", "date": "2026-10-18T10:37:16.000Z", "distro": "resolute", "commit": "d1e2ae2ac80da3ce41086bede8e480f0b95d706b", "fileid": "https://r2.ropensci.org/53626370bfa6af8f70e88897c6d5599391b3b8466a118c63319abb4216f65999", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ekstroem/actions/runs/39119622320" }, { "r": "4.5.3", "os": "mac", "version": "1.30.2", "date": "2026-10-18T10:42:30.000Z", "commit": "d1e2ae2ac80da3ce41086bede8e480f0b95d706b", "fileid": "https://r2.ropensci.org/afcad68bd8f0622d78fb25d2aaa551a338b2e4a85595169b4e9b509121da3882", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ekstroem/actions/runs/39119622320" }, { "r": "4.6.1", "os": "mac", "version": "1.30.2", "date": "2026-10-18T10:39:44.000Z", "commit": "d1e2ae2ac80da3ce41086bede8e480f0b95d706b", "fileid": "https://r2.ropensci.org/58af3213d958d19cdbecba8a505eb9000ec3e79b1f9ad0a7229628638c94d3e6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ekstroem/actions/runs/39119622320" }, { "r": "4.6.0", "os": "wasm", "version": "1.30.2", "date": "2026-10-18T10:36:44.000Z", "commit": "d1e2ae2ac80da3ce41086bede8e480f0b95d706b", "fileid": "https://r2.ropensci.org/4009dff6e171e5cc7d578e7936380bc569fd0f722d5ec93aaa18e9b930c237c7", "status": "success", "buildurl": "https://github.com/r-universe/ekstroem/actions/runs/39119622320" }, { "r": "4.7.0", "os": "win", "version": "1.30.2", "date": "2026-10-18T10:36:03.000Z", "commit": "d1e2ae2ac80da3ce41086bede8e480f0b95d706b", "fileid": "https://r2.ropensci.org/29e66d933a5dd907e59d83de6c5e7c44c9c709c07b8431e6fb8d554056078962", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ekstroem/actions/runs/39119622320" }, { "r": "4.5.3", "os": "win", "version": "1.30.2", "date": "2026-10-18T10:35:56.000Z", "commit": "d1e2ae2ac80da3ce41086bede8e480f0b95d706b", "fileid": "https://r2.ropensci.org/195c42e4c6fefff9f38bb958e7a3478b52428068f5a1fadac2e16689d4f5aa15", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ekstroem/actions/runs/39119622320" }, { "r": "4.6.1", "os": "win", "version": "1.30.2", "date": "2026-10-18T10:35:44.000Z", "commit": "d1e2ae2ac80da3ce41086bede8e480f0b95d706b", "fileid": "https://r2.ropensci.org/2a000fa7d4bf19de9e47771286e322c1006a7972f19dcb711d18070abb8c4912", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ekstroem/actions/runs/39119622320" } ] }